PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 173aa    MW: 19554.4 Da    PI: 7.3833
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019140genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB122.61.6e-381698292
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                 re+dr++Pian+srimkk +Pan+kiskdak+tv+ecvs        eas+kcq+ekrkti+gddll a+a+lGfedyv plk yl+ yre
  DCAR_019140 16 REHDRIFPIANISRIMKKGMPANGKISKDAKDTVEECVS--------EASEKCQKEKRKTIDGDDLLGAMANLGFEDYVGPLKNYLSCYRE 98
                 899**********************************97........6******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-331199IPR009072Histone-fold
SuperFamilySSF471131.57E-261999IPR009072Histone-fold
PfamPF008083.7E-152277IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.7E-64159No hitNo description
PRINTSPR006153.7E-66078No hitNo description
PRINTSPR006153.7E-67997No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADGSSSQAG GSSESREHDR IFPIANISRI MKKGMPANGK ISKDAKDTVE ECVSEASEKC  60
QKEKRKTIDG DDLLGAMANL GFEDYVGPLK NYLSCYRESM FLYWLTFYHH EFSLTPCISS  120
YVLVWFMVGE IANRWRVILR DLLGEGRDQL RRIRTLDLIS LQISSMLKAW AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-301698292Transcription factor HapC (Eurofung)
4g92_B1e-301698292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436198.11e-43hypothetical protein CICLE_v10032893mg
RefseqXP_006436201.11e-43hypothetical protein CICLE_v10032893mg
SwissprotQ9SLG02e-41NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A124SHJ51e-43A0A124SHJ5_CYNCS; Histone-fold
STRINGVIT_13s0019g03600.t019e-42(Vitis vinifera)
STRINGGLYMA19G36220.23e-41(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.64e-40nuclear factor Y, subunit B1